rs62281195 chr3:172711343 G>A
- Sequence
gtgacgagtctctggacaaagcaa[G/A]tgggtcattctgactcagagtact
- ASB in cell types
- HUVEC-C (HUVEC, umbilical vein endothelial cells) 22RV1 (prostate carcinoma) HMEC (human mammary epithelial cells) HCASMC (Human coronary artery smooth muscle cells)
- ASB for transcription factors
- TF65_HUMAN ANDR_HUMAN TCF21_HUMAN SPI1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TF65_HUMAN | 3.85 | n/a | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 3.42 | n/a | 2.00 | n/a | No Hit | |||
| TCF21_HUMAN | 1.42 | n/a | 2.50 | n/a | No Hit | |||
| SPI1_HUMAN | 1.68 | -5.26 | 2.50 | -3.00 | Concordant | |||
| TYY1_HUMAN | -0.62 | 1.25 | 1.00 | n/a | No Hit |
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Motif analysis
