rs62294573 chr3:162717462 T>A
- Sequence
actcttaactccctcttaaagtaa[T/A]taagtaatctttcctggcagggct
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MCF7 WS8 cells MCF7 TamR (invasive ductal breast carcinoma Tamoxifen resistant)
- ASB for transcription factors
- FOXA1_HUMAN GATA3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.72 | 1.75 | 1.59 | 6.36 | Concordant | |||
| GATA3_HUMAN | -0.00 | 2.88 | 2.40 | n/a | No Hit |
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Motif analysis
