rs62305644 chr4:86898907 T>C
- Sequence
agaacaagaggccgagtgctctga[T/C]agaaagtctaatcacgaaattcaa
- ASB in cell types
- foreskin keratinocyte GM18526 (B – cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.36 | 0.81 | 1.45 | n/a | No Hit | |||
| STAG1_HUMAN | 0.90 | -0.89 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Aorta, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Colon_Sigmoid, Esophagus_Muscularis, Muscle_Skeletal, Testis, Thyroid