rs62311720 chr4:83084365 C>G
- Sequence
agtaccacaacacagctgcagggg[C/G]agaggggcgtcagtgattcaggac
- ASB in cell types
- GM12891 (male B- cells lymphoblastoid cell line) K562 (myelogenous leukemia) GM18486 (Lymphoblastoid Cell Lines) GM23338
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN CDK9_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.31 | 2.47 | 1.72 | 2.35 | Concordant | |||
| STAG1_HUMAN | 1.00 | 2.17 | 1.07 | n/a | n/a | |||
| CDK9_HUMAN | 1.61 | -0.62 | 1.00 | n/a | n/a |
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Motif analysis
