rs62319820 chr4:121697217 G>A

Sequence
gccgcagagctgctggaaccagga[G/A]gaggcgccgctcccccgagggccc
ASB in cell types
CD14+ monocytes HMEC (human mammary epithelial cells) pancreas SUM159PT (Triple negative breast cancer)
ASB for transcription factors
CTCF_HUMAN STAG1_HUMAN STAT1_HUMAN STAG2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 2.57 -0.41 2.0·10-111.00 1.14 -4.18 Concordant
STAG1_HUMAN 2.59 -2.55 5.6·10-51.00 1.00 n/a n/a
STAT1_HUMAN 3.38 n/a 1.4·10-41.00 2.00 n/a No Hit
STAG2_HUMAN 3.15 -3.29 4.5·10-41.00 1.00 n/a n/a
BRD2_HUMAN -0.39 1.44 1.000.01 1.00 n/a n/a
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Motif analysis

CTCF_HUMAN Concordant
CTCF_HUMAN pic

Genetic associations

GTEx eQTL Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Cells_EBV-transformed_lymphocytes,  Esophagus_Mucosa,  Liver,  Muscle_Skeletal,  Skin_Sun_Exposed_Lower_leg,  Whole_Blood

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