rs62333822 chr4:168504185 T>G
- Sequence
ttgatttcatgttcaacttactat[T/G]ccaggaaagggaagtagaagaaag
- ASB in cell types
- CD14+ monocytes HUVEC-C (HUVEC, umbilical vein endothelial cells) monocytes from periferal blood
- ASB for transcription factors
- STAT1_HUMAN TF65_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.34 | -0.79 | 2.00 | -3.26 | Concordant | |||
| TF65_HUMAN | 1.71 | n/a | 2.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Lung, Nerve_Tibial, Whole_Blood