rs62338232 chr4:184839031 G>A
- Sequence
agaagacaagaatatctacatgac[G/A]tcatggaggggccagaaaagggtg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) 22RV1 (prostate carcinoma) HCASMC (Human coronary artery smooth muscle cells)
- ASB for transcription factors
- ATF2_HUMAN ANDR_HUMAN JUN_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF2_HUMAN | 3.67 | n/a | 1.00 | 1.22 | Weak Discordant | |||
| ANDR_HUMAN | 2.78 | -1.87 | 2.00 | n/a | No Hit | |||
| JUN_HUMAN | 2.36 | -3.83 | 1.33 | -5.18 | Concordant |
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Motif analysis
