rs62492102 chr7:152464180 A>G
- Sequence
ctccttcctcttcctgcccgcggt[A/G]gtgggggtggggcaggcctcggga
- ASB in cell types
- HepG2 (hepatoblastoma) thymus-derived CD34- cells thymus-derived CD34+ cells NCI-H2171 (small cell lung carcinoma)
- ASB for transcription factors
- BC11B_HUMAN RBM25_HUMAN MAX_HUMAN INT11_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BC11B_HUMAN | 2.48 | n/a | 2.00 | n/a | n/a | |||
| RBM25_HUMAN | 2.48 | 0.27 | 1.50 | n/a | n/a | |||
| MAX_HUMAN | -0.36 | 1.49 | 1.56 | n/a | No Hit | |||
| INT11_HUMAN | 1.00 | -3.16 | 2.00 | n/a | n/a | |||
| JMJD6_HUMAN | 2.17 | n/a | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood