rs62640229 chr7:150003359 G>C
- Sequence
cgtatgtggaatgtgtggtatgtg[G/C]tgtgtgctgtgtgtgtgatgtttg
- ASB in cell types
- HepG2 (hepatoblastoma) GM12878 (female B-cells lymphoblastoid cell line) K562 (myelogenous leukemia)
- ASB for transcription factors
- ZN211_HUMAN ATF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN211_HUMAN | 2.33 | n/a | 2.00 | 0.51 | Weak Discordant | |||
| ATF2_HUMAN | 1.72 | -0.22 | 1.50 | n/a | No Hit |
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Motif analysis
