rs630648 chr11:93741512 G>C
- Sequence
agaaaagggttggctatttccgtg[G/C]cccaagtaatagtcaggccgaaat
- ASB in cell types
- 22RV1 (prostate carcinoma) primary B-CLL cells HeLa S3 (cervical adenocarcinoma)
- ASB for transcription factors
- ANDR_HUMAN UBF1_HUMAN SPI1_HUMAN BRD4_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | n/a | 3.44 | 2.00 | n/a | No Hit | |||
| UBF1_HUMAN | -2.33 | 2.58 | 1.00 | n/a | n/a | |||
| SPI1_HUMAN | n/a | 2.10 | 2.75 | n/a | No Hit | |||
| BRD4_HUMAN | -0.29 | 2.48 | 2.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood