rs6426239 chr1:247323434 C>T
- Sequence
tgtaaaatgaggattacaaaatga[C/T]gcacatgaaaagtactctgtaaac
- ASB in cell types
- THP-1 (acute monocytic leukemia)
- ASB for transcription factors
- VDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| VDR_HUMAN | 3.12 | -3.00 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP alzheimers disease, comorbid depressive syndrome and alcohol dependence, transmission distortion, variant creutzfeldt-jakob disease
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood