rs6429780 chr1:15795166 T>C
- Sequence
tttagactgcaggcctcttgcttg[T/C]aagtgacatataattttcccaatc
- ASB in cell types
- K562 (myelogenous leukemia) HUVEC-C (HUVEC, umbilical vein endothelial cells)
- ASB for transcription factors
- MEIS2_HUMAN IKZF1_HUMAN BRD4_HUMAN NCOA1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MEIS2_HUMAN | 1.66 | -1.66 | 1.00 | n/a | No Hit | |||
| IKZF1_HUMAN | 0.54 | -0.36 | 1.00 | n/a | n/a | |||
| BRD4_HUMAN | 2.17 | n/a | 1.00 | n/a | n/a | |||
| NCOA1_HUMAN | 1.83 | 0.07 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood