rs6481698 chr10:30542458 A>G
- Sequence
cattgcgtagatcaattgccagct[A/G]ggcaaacagctacacggctctgtc
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) ER+ breast tumor CD14+ monocytes
- ASB for transcription factors
- TFAP4_HUMAN STAT1_HUMAN MGAP_HUMAN LMBL2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TFAP4_HUMAN | n/a | 3.83 | 1.50 | 4.56 | Concordant | |||
| STAT1_HUMAN | 2.46 | -0.56 | 1.67 | n/a | No Hit | |||
| MGAP_HUMAN | 3.07 | -5.41 | 2.00 | n/a | No Hit | |||
| LMBL2_HUMAN | 2.77 | -5.29 | 2.00 | n/a | n/a |
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Motif analysis
