rs6510666 chr19:2395962 T>C
- Sequence
gcgcagcttgcagtgagccgagat[T/C]gcgccaccgcactccagcctgggc
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- TEAD3_HUMAN FOXP1_HUMAN ATF2_HUMAN ATF7_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TEAD3_HUMAN | 3.49 | -3.63 | 1.00 | n/a | No Hit | |||
| FOXP1_HUMAN | 2.56 | -2.18 | 1.00 | n/a | No Hit | |||
| ATF2_HUMAN | 1.64 | -1.44 | 1.00 | n/a | No Hit | |||
| ATF7_HUMAN | 1.76 | -2.88 | 1.50 | -1.87 | Weak Concordant | |||
| ZGPAT_HUMAN | 2.56 | n/a | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Liver, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood