rs6585785 chr10:122102021 A>C

Sequence
aatgcattgttgggcgatttcatc[A/C]ttgtgcaaacatcataaagtgtgc
ASB in cell types
A549 (lung carcinoma) HepG2 (hepatoblastoma)
ASB for transcription factors
JUN_HUMAN CEBPB_HUMAN EP300_HUMAN GCR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
JUN_HUMAN 2.46 -0.87 2.3·10-121.00 2.33 n/a No Hit
CEBPB_HUMAN 3.16 -4.50 9.3·10-101.00 2.00 -1.55 Weak Concordant
EP300_HUMAN 2.60 n/a 1.2·10-91.00 2.83 n/a n/a
GCR_HUMAN 2.00 -0.87 8.8·10-70.98 3.86 n/a No Hit
FOXA1_HUMAN 3.15 -0.97 1.5·10-51.00 2.00 0.37 Weak Discordant
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Motif analysis

CEBPB_HUMAN Weak Concordant
CEBPB_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Muscle_Skeletal,  Nerve_Tibial

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