rs6586536 chr1:16905785 T>C
- Sequence
ctcagcctttggattttaatcctc[T/C]gggcctgagggcactcaataaaat
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- EP300_HUMAN GMEB1_HUMAN ZN444_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EP300_HUMAN | 2.12 | -0.21 | 1.25 | n/a | n/a | |||
| GMEB1_HUMAN | -2.03 | 2.21 | 4.00 | n/a | No Hit | |||
| ZN444_HUMAN | -4.75 | 2.34 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood