rs6590404 chr11:129696085 C>T
- Sequence
ggcccggccgggagactccctcca[C/T]gccccgtgtgtggagtgcccgggc
- ASB in cell types
- GM19238 (female B-cells lymphoblastoid cell lines) GM19099 (female B-cells Lymphoblastoid Cell Lines) HCT-116 (colon carcinoma) LNCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.67 | -0.61 | 1.19 | n/a | No Hit | |||
| RAD21_HUMAN | 3.52 | -3.40 | 1.00 | n/a | n/a | |||
| ESR1_HUMAN | 2.65 | -4.88 | 2.00 | n/a | No Hit |
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