rs6593933 chr1:203776918 T>C

Sequence
atgacagtctggtactgatgacca[T/C]gcagggttagccagggcagcagca
ASB in cell types
GM02255 (Lymphoblastoid Cell Lines) foreskin keratinocyte liver
ASB for transcription factors
CTCF_HUMAN RAD21_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.92 0.41 3.2·10-61.00 1.51 n/a No Hit
RAD21_HUMAN 1.54 0.00 9.2·10-31.00 1.60 n/a n/a
Items per page:
1 – 2 of 2

Motif analysis

No data available

Genetic associations

GRASP college completion,  diabetic retinopathy in type 2 diabetes mellitus,  diastolic blood pressure (dbp),  ldl cholesterol,  rheumatoid arthritis,  total cholesterol,  triglycerides
GTEx eQTL Brain_Cortex,  Brain_Hypothalamus,  Lung,  Spleen,  Whole_Blood

Download