rs6594660 chr5:113039000 G>A
- Sequence
tggatggtcggtgactaaatgacc[G/A]cagcctcctggagggcagggcgct
- ASB in cell types
- MDA-MB-231p27CK-DD (breast cancer cells, phosphimimetic p27 cell line) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) primary human epidermal keratinocytes foreskin keratinocyte
- ASB for transcription factors
- JUN_HUMAN CDN1B_HUMAN BRD4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | n/a | 3.08 | 2.00 | 0.00 | Weak Discordant | |||
| CDN1B_HUMAN | -1.36 | 2.75 | 2.00 | n/a | n/a | |||
| BRD4_HUMAN | -0.22 | 2.17 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Aorta, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood