rs6595611 chr5:125412931 C>T
- Sequence
ggaacagcagccagcagatggctg[C/T]gccgagcggccagcctgcctccgc
- ASB in cell types
- HCASMC (Human coronary artery smooth muscle cells) GM19240 (B cells Lymphoblastoid Cell Lines) MCF7 (Invasive ductal breast carcinoma) MCF7L-P(immortalized breast epithelial cell line)
- ASB for transcription factors
- CTCF_HUMAN TCF21_HUMAN STAG1_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.68 | 1.50 | 1.52 | 0.34 | Weak Concordant | |||
| TCF21_HUMAN | n/a | 2.69 | 1.50 | -0.24 | Weak Discordant | |||
| STAG1_HUMAN | 1.72 | 2.11 | 1.17 | n/a | n/a | |||
| SMC3_HUMAN | -0.44 | 1.48 | 1.67 | n/a | n/a | |||
| RFX1_HUMAN | n/a | 1.57 | 2.75 | n/a | No Hit |
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Motif analysis
