rs6596770 chr5:108176444 C>T

Sequence
actatttgtatttgtagaaatgtt[C/T]acttatgcactattgctcactagg
ASB in cell types
LNCaP (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN -0.15 1.62 1.001.4·10-6 1.49 8.23 Concordant
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Motif analysis

FOXA1_HUMAN Concordant
FOXA1_HUMAN pic

Genetic associations

GRASP college completion,  subjective response to d-amphetamine and the risk for amphetamine addiction,  years of education
GTEx eQTL Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Whole_Blood

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