rs6597484 chr7:155257638 C>T
- Sequence
cttctgtgggaagtaggcacacgc[C/T]gacttggggaaagttgaccagggt
- ASB in cell types
- HUVEC-C (HUVEC, umbilical vein endothelial cells) breast tumor BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- ESR1_HUMAN TF65_HUMAN GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 2.96 | n/a | 2.00 | 1.71 | Weak Discordant | |||
| TF65_HUMAN | 2.26 | n/a | 2.50 | n/a | No Hit | |||
| GCR_HUMAN | -1.97 | 2.47 | 1.00 | n/a | No Hit |
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Motif analysis
