rs6597600 chr9:133144643 C>T
- Sequence
gagcgcgccaagctgaggagcagg[C/T]gggctccgctcacgcccccacacc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) adult erythroblasts liver neutrophils
- ASB for transcription factors
- CTCF_HUMAN CDN1B_HUMAN KDM6A_HUMAN JUN_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.15 | 0.67 | 1.21 | n/a | No Hit | |||
| CDN1B_HUMAN | 2.03 | -0.18 | 1.88 | n/a | n/a | |||
| KDM6A_HUMAN | 2.71 | n/a | 2.50 | n/a | n/a | |||
| JUN_HUMAN | 1.00 | 0.41 | 1.88 | n/a | No Hit | |||
| STAG1_HUMAN | 0.81 | 0.60 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adrenal_Gland, Artery_Aorta, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Pituitary