rs6598476 chr15:101446466 C>T
- Sequence
aatgctgctgtgtacaaatatctg[C/T]tcgtgtccctgctttcaattcttt
- ASB in cell types
- K562 (myelogenous leukemia) HUVEC-C (HUVEC, umbilical vein endothelial cells)
- ASB for transcription factors
- IKZF1_HUMAN HDAC1_HUMAN NFAC3_HUMAN TF65_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | 0.47 | 2.34 | 1.67 | n/a | n/a | |||
| HDAC1_HUMAN | 0.02 | 2.64 | 2.00 | n/a | n/a | |||
| NFAC3_HUMAN | -1.34 | 2.63 | 2.00 | n/a | No Hit | |||
| TF65_HUMAN | -5.75 | 2.20 | 2.50 | n/a | No Hit | |||
| NFIC_HUMAN | n/a | 1.93 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle