rs6598884 chr1:27481295 C>G
- Sequence
tccagcctgggcgacagagggaga[C/G]tccgtatgaaaaaaataacgcatg
- ASB in cell types
- MS-1 (Small cell lung carcinoma) GM02630 (Fanconi anemi) GM02610 (Lymphoblastoid Cell Lines) 2588 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.94 | -1.80 | 1.00 | -1.04 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adrenal_Gland, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Hypothalamus, Breast_Mammary_Tissue, Skin_Not_Sun_Exposed_Suprapubic, Testis, Uterus, Whole_Blood