rs6599571 chr8:144326675 C>T
- Sequence
cccggccgcagccaagcgtgggcc[C/T]gccgggttcgtagcgcccgaggcg
- ASB in cell types
- A549 (lung carcinoma) HCT-116 (colon carcinoma) hepatocytes 22RV1 (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.41 | 1.08 | 1.20 | n/a | No Hit | |||
| RAD21_HUMAN | 0.28 | 1.24 | 1.27 | n/a | n/a | |||
| SMC3_HUMAN | 1.19 | 0.91 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Brain_Cerebellar_Hemisphere, Esophagus_Mucosa, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Testis, Thyroid, Whole_Blood