rs6600164 chr16:1706177 T>C

Sequence
ccggctggagggcgggacttccgg[T/C]gagtgagtgacgggcgcagcctcg
ASB in cell types
K562 (myelogenous leukemia) glioblastoma cells foreskin keratinocyte HepG2 (hepatoblastoma)
ASB for transcription factors
ZBT40_HUMAN PKNX1_HUMAN GABP1_HUMAN CREB1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZBT40_HUMAN 1.28 n/a 1.2·10-51.00 2.00 n/a No Hit
PKNX1_HUMAN 0.98 n/a 8.7·10-51.00 2.00 n/a No Hit
GABP1_HUMAN 1.09 -0.39 1.6·10-41.00 1.67 n/a n/a
CREB1_HUMAN 1.35 -0.21 4.9·10-31.00 1.38 n/a No Hit
ILF3_HUMAN 2.51 -4.74 0.051.00 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

EMBL-EBI intraocular pressure
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellum,  Brain_Substantia_nigra,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Thyroid,  Whole_Blood

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