rs6601208 chr5:178074663 C>G
- Sequence
aaggaccacaggacacagaaagcc[C/G]tttgttcttgtgataaggcagggg
- ASB in cell types
- K562 (myelogenous leukemia) GM18486 (Lymphoblastoid Cell Lines) GM19193 (female B-cells Lymphoblastoid Cell Lines) HeLa (cervical adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN MNT_HUMAN LMBL2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.39 | 3.47 | 1.43 | n/a | No Hit | |||
| STAG1_HUMAN | 0.84 | 3.41 | 1.07 | n/a | n/a | |||
| MNT_HUMAN | -0.80 | 2.27 | 1.75 | n/a | No Hit | |||
| LMBL2_HUMAN | -0.14 | 3.09 | 1.50 | n/a | n/a | |||
| ARI1B_HUMAN | -2.06 | 2.84 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Putamen_basal_ganglia, Lung, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid