rs6601330 chr8:9555797 A>T
- Sequence
cccttggctgttctctgagctccc[A/T]atacttccctccttctctttggcc
- ASB in cell types
- HepG2 (hepatoblastoma) HEK293 (embryonic kidney) CD14+ monocytes adult erythroblasts
- ASB for transcription factors
- RBM25_HUMAN HCFC1_HUMAN STAT1_HUMAN PKNX1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBM25_HUMAN | 1.68 | -0.25 | 1.00 | n/a | n/a | |||
| HCFC1_HUMAN | 2.11 | n/a | 2.50 | n/a | n/a | |||
| STAT1_HUMAN | 2.82 | 0.34 | 2.00 | n/a | No Hit | |||
| PKNX1_HUMAN | -1.97 | 2.47 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellum, Brain_Cortex, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Colon_Transverse, Muscle_Skeletal, Nerve_Tibial, Small_Intestine_Terminal_Ileum, Testis, Thyroid