rs6602077 chr10:6643116 G>A
- Sequence
atgtggcttctcagttccttccgc[G/A]cccatgttaccctctccctgcaat
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia) MOLT-4 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- SPI1_HUMAN CDK9_HUMAN ETS1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | -0.99 | 2.35 | 1.00 | 1.39 | Weak Concordant | |||
| CDK9_HUMAN | 1.85 | -0.01 | 1.00 | n/a | n/a | |||
| ETS1_HUMAN | -0.73 | 2.32 | 1.00 | 0.24 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, refractive error