rs6604120 chr1:108746865 C>T
- Sequence
gggcctcgttttgcagccccaacc[C/T]agcggtctgttgaggagccgccgc
- ASB in cell types
- HEK293 (embryonic kidney) neural cell MDA-MB-231 (breast adenocarcinoma) breast tumor
- ASB for transcription factors
- CTCF_HUMAN ELF4_HUMAN BRD2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.07 | 1.37 | 1.18 | 2.34 | Concordant | |||
| ELF4_HUMAN | -1.91 | 2.40 | 1.00 | n/a | No Hit | |||
| BRD2_HUMAN | 0.35 | 1.16 | 1.91 | n/a | n/a |
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Motif analysis
