rs6604905 chr1:16042283 C>A
- Sequence
ttgggtcctgcgccccctggctgc[C/A]ctcttctcagcctcctggggcaca
- ASB in cell types
- GM18486 (Lymphoblastoid Cell Lines) K562 (myelogenous leukemia) GM19240 (B cells Lymphoblastoid Cell Lines) glioblastoma cells
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.10 | 1.65 | 1.56 | -1.06 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Stomach, Testis, Thyroid