rs6606716 chr12:109433907 T>C
- Sequence
ggatcaccaggcaccacccactgc[T/C]gtccccagtggctgccctgggaac
- ASB in cell types
- GM02255 (Lymphoblastoid Cell Lines) HepG2 (hepatoblastoma)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 3.01 | -0.39 | 1.50 | -1.54 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Thyroid