rs6608 chr17:7561096 C>T
- Sequence
cgggggacgggcgccaggcattgt[C/T]cagacctggtcggggcccactgga
- ASB in cell types
- neutrophils from periferal blood GM12878 (female B-cells lymphoblastoid cell line) A549 (lung carcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- RAD21_HUMAN SMC3_HUMAN FOXK2_HUMAN ANDR_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 1.57 | 0.58 | 2.61 | n/a | n/a | |||
| SMC3_HUMAN | 1.37 | 0.33 | 3.14 | n/a | n/a | |||
| FOXK2_HUMAN | 2.60 | -1.82 | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 1.95 | -0.78 | 2.00 | n/a | No Hit | |||
| ARI4B_HUMAN | 2.33 | -1.93 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP asthma, diastolic blood pressure (dbp), height, hypertension (early onset hypertension), myopia, partial epilepsy, sporadic creutzfeldt-jakob disease, systolic blood pressure (sbp)
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood