rs6644605 chrX:1391744 C>T

Sequence
cgccctgcagcagcggtcacgtga[C/T]gcggcccccggaagccggcggcgc
ASB in cell types
CD14+ monocytes GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
STAT1_HUMAN TYY1_HUMAN FOXK2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN -1.17 3.06 1.007.2·10-7 2.00 n/a No Hit
TYY1_HUMAN 2.38 n/a 6.8·10-31.00 1.00 n/a No Hit
FOXK2_HUMAN -2.21 3.00 1.008.7·10-3 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Coronary,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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