rs6644724 chrX:1392220 A>G

Sequence
ggctgcgccgccaggccccgcccc[A/G]caccagcctgcgtgcctcgcctct
ASB in cell types
CD14+ monocytes
ASB for transcription factors
STAT1_HUMAN RBM25_HUMAN RFOX2_HUMAN EP300_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN -1.59 2.74 1.004.0·10-4 2.00 n/a No Hit
RBM25_HUMAN 1.33 -4.45 3.6·10-31.00 4.00 n/a n/a
RFOX2_HUMAN -2.02 2.26 1.005.9·10-3 4.00 n/a n/a
EP300_HUMAN n/a 2.48 1.000.05 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Coronary,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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