rs6656196 chr1:26432282 G>A

Sequence
tttgggtgacggaaggggcgtgtc[G/A]cagcgcccaaagatgacgtgttct
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) K562 (myelogenous leukemia) CD14+ monocytes CTV-1 (Adult T acute lymphoblastic leukemia)
ASB for transcription factors
STAT1_HUMAN CREB1_HUMAN SPI1_HUMAN CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN 1.47 -0.21 1.2·10-31.00 1.75 n/a No Hit
CREB1_HUMAN -0.15 1.16 1.004.0·10-3 1.20 n/a No Hit
SPI1_HUMAN 0.88 0.24 4.7·10-31.00 1.50 n/a No Hit
CTCF_HUMAN 0.95 0.45 0.030.86 1.31 n/a No Hit
KAISO_HUMAN 1.61 0.05 0.040.98 1.12 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP mean corpuscular volume (mcv),  red blood cell count (rbc),  waist hip ratio
GTEx eQTL Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Liver,  Lung,  Muscle_Skeletal,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

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