rs6658920 chr1:21931246 C>T

Sequence
ctctcaaggctgctattgacacag[C/T]cctgacgccaccaggctgggcagt
ASB in cell types
K562 (myelogenous leukemia) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line)
ASB for transcription factors
ZNF24_HUMAN EP300_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZNF24_HUMAN -0.28 1.50 1.000.03 1.00 n/a No Hit
EP300_HUMAN 0.97 1.64 0.790.05 1.22 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP cystatin c in serum,  height,  ldl cholesterol change with statins,  refractive error,  total cholesterol change with statins
GTEx eQTL Adipose_Visceral_Omentum,  Colon_Sigmoid,  Esophagus_Mucosa,  Pancreas,  Thyroid,  Whole_Blood

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