rs6659878 chr1:242239725 C>T

Sequence
atccaccgcttaaccaacttgtcc[C/T]ctcgggcaagtcgtttaatctctc
ASB in cell types
A549 (lung carcinoma) 22RV1 (prostate carcinoma)
ASB for transcription factors
GCR_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GCR_HUMAN 1.66 -0.26 0.010.91 2.00 n/a No Hit
ANDR_HUMAN 1.90 -0.98 0.041.00 2.00 n/a No Hit
Items per page:
1 – 2 of 2

Motif analysis

No data available

Genetic associations

GTEx eQTL Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hippocampus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia

Download