rs6660021 chr1:100463878 T>C
- Sequence
ggctggagcctcgagttcctcatg[T/C]gcagctcctcctagtgtcgctggg
- ASB in cell types
- HMEC (human mammary epithelial cells) 2588 (Lymphoblastoid Cell Lines) GM19238 (female B-cells lymphoblastoid cell lines) CD34+ stem cells-derived erythroblasts
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN SMC1A_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.10 | -0.06 | 1.50 | -0.28 | Weak Concordant | |||
| STAG1_HUMAN | 1.99 | -0.11 | 1.00 | n/a | n/a | |||
| SMC1A_HUMAN | 2.76 | 1.11 | 1.50 | n/a | n/a |
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Motif analysis
