rs6660788 chr1:88991904 C>T
- Sequence
ctcgactccaaaagcaacagactg[C/T]ctttctgttttaactacaaatgtt
- ASB in cell types
- K562 (myelogenous leukemia) primary B-CLL cells 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.03 | -0.80 | 2.00 | 3.84 | Discordant |
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Motif analysis
Genetic associations
GRASP ldl cholesterol change with statins, systolic blood pressure (sbp), total cholesterol change with statins, triglycerides change with statins
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Brain_Hippocampus, Brain_Hypothalamus, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Spleen, Thyroid