rs6661053 chr1:114496497 T>C

Sequence
caacacctaacatgtcccatcaaa[T/C]gaaaacatgggatgtggcatcaca
ASB for transcription factors
FOXA1_HUMAN
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 0.57 2.54 0.811.7·10-3 3.83 -1.84 Weak Discordant
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Motif analysis

FOXA1_HUMAN Weak Discordant
FOXA1_HUMAN pic

Genetic associations

GRASP alzheimers disease (apoe4 homozygotes),  hdl cholesterol,  urinary albumin-to-creatinine ratio,  variant creutzfeldt-jakob disease,  waist hip ratio
GTEx eQTL Cells_Cultured_fibroblasts

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