rs6662295 chr1:11907848 G>C
- Sequence
tgggaccagactctgctctgcccc[G/C]cggtggtggcctcaggcgcagcgc
- ASB in cell types
- K562 (myelogenous leukemia) GM19099 (female B-cells Lymphoblastoid Cell Lines) Peyer's patch thoracic aorta
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN AP2A_HUMAN TBX21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.11 | 1.97 | 1.47 | 5.34 | Concordant | |||
| RAD21_HUMAN | 0.68 | 1.44 | 1.59 | n/a | n/a | |||
| AP2A_HUMAN | 2.87 | -4.94 | 1.50 | -0.29 | Weak Concordant | |||
| TBX21_HUMAN | -1.85 | 1.82 | 1.50 | n/a | No Hit | |||
| GATA2_HUMAN | -0.99 | 2.35 | 2.00 | n/a | No Hit |
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Motif analysis
