rs6664239 chr1:11740464 C>T
- Sequence
atttatcaaaccaaagtgacgtca[C/T]gcagaggagactgtgtgtgtgcta
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) HCASMC (Human coronary artery smooth muscle cells) K562 (myelogenous leukemia)
- ASB for transcription factors
- ATF2_HUMAN ATF7_HUMAN ATF3_HUMAN CREB1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF2_HUMAN | -4.05 | 3.57 | 1.75 | 2.53 | Concordant | |||
| ATF7_HUMAN | -2.68 | 2.37 | 1.00 | 1.28 | Weak Concordant | |||
| ATF3_HUMAN | -1.26 | 1.44 | 1.17 | 1.69 | Weak Concordant | |||
| CREB1_HUMAN | -1.16 | 2.00 | 2.00 | 1.81 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Esophagus_Mucosa, Muscle_Skeletal, Pancreas, Skin_Sun_Exposed_Lower_leg, Thyroid