rs6664823 chr1:152960948 A>C
- Sequence
aggagatggtttatttagcttccc[A/C]accacagacaaaaagttattagta
- ASB in cell types
- HCT-116 (colon carcinoma) GM18505 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 0.82 | 2.92 | 1.25 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, cystatin c in serum, ldl cholesterol
GTEx eQTL Adipose_Visceral_Omentum, Brain_Cerebellum, Colon_Transverse, Esophagus_Mucosa, Ovary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis