rs6664904 chr1:101371376 C>A

Sequence
catatgggaaagcaaatctaggtt[C/A]acagatttggcaactgataggctt
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) HUVEC-C (HUVEC, umbilical vein endothelial cells)
ASB for transcription factors
TF65_HUMAN SUH_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TF65_HUMAN 1.51 -0.35 0.021.00 2.50 n/a No Hit
SUH_HUMAN 1.45 1.04 0.050.62 2.17 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Cells_EBV-transformed_lymphocytes,  Muscle_Skeletal,  Skin_Not_Sun_Exposed_Suprapubic,  Spleen

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