rs6666138 chr1:58584783 C>T
- Sequence
cttcctttcccagagctggcccgg[C/T]gatgtgtgatgccctgttaagggg
- ASB in cell types
- HUVEC-C (HUVEC, umbilical vein endothelial cells) MDA-MB-231p27CK-DD (breast cancer cells, phosphimimetic p27 cell line) MDA-MB-231 (breast adenocarcinoma)
- ASB for transcription factors
- JUN_HUMAN NOTC1_HUMAN SUH_HUMAN SRF_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 1.85 | 2.06 | 1.50 | n/a | No Hit | |||
| NOTC1_HUMAN | 1.47 | n/a | 2.50 | n/a | n/a | |||
| SUH_HUMAN | 1.42 | -0.57 | 2.17 | n/a | No Hit | |||
| SRF_HUMAN | 2.24 | -2.06 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Thyroid, Whole_Blood