rs6667605 chr1:2571341 C>T

Sequence
aaatgcagaaagctcaacagaccc[C/T]aagaggggtaaatagagaggcatg
ASB for transcription factors
THB_HUMAN
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
THB_HUMAN -2.43 2.54 1.000.01 1.00 0.67 Weak Concordant
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Motif analysis

THB_HUMAN Weak Concordant
THB_HUMAN pic

Genetic associations

EMBL-EBI inflammatory bowel disease,  ulcerative colitis
GRASP body mass index (bmi),  prop taste detection threshold,  rheumatoid arthritis,  spine bone mineral density (bmd),  waist hip ratio
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Nucleus_accumbens_basal_ganglia,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Liver,  Lung,  Nerve_Tibial,  Ovary,  Pancreas,  Pituitary,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Thyroid,  Whole_Blood

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