rs6667888 chr1:181127239 A>G
- Sequence
tgcagcatcaggtttctgaagggc[A/G]ggaaaggggagctgacgtcagcag
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HEK293 (embryonic kidney) MCF7L-P(immortalized breast epithelial cell line)
- ASB for transcription factors
- ESR1_HUMAN LMBL2_HUMAN GATA3_HUMAN T2FA_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 0.44 | 1.08 | 1.84 | -3.66 | Discordant | |||
| LMBL2_HUMAN | n/a | 3.14 | 1.00 | n/a | n/a | |||
| GATA3_HUMAN | 0.05 | 1.70 | 1.83 | n/a | No Hit | |||
| T2FA_HUMAN | n/a | 1.82 | 2.00 | n/a | n/a | |||
| P66B_HUMAN | -0.87 | 2.35 | 2.00 | n/a | n/a |
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Motif analysis
