rs6668915 chr1:231602144 A>C

Sequence
ctgattttatccttgggatggcat[A/C]gtctatcccacgactgccaaaaga
ASB in cell types
HEK293 (embryonic kidney) VCaP (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 0.16 1.13 1.009.2·10-3 1.80 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Nerve_Tibial,  Spleen,  Testis,  Whole_Blood

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